rs49966091 SNP Detail

Summary

• ID
  rs49966091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143820979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCATCAGC TCACTCCAGG ACTTGCCCTG TGAGTACCTA
  CAGACAGCTA GAGGCTAAAT GGAGGTGAGA GTATTACTAT AGATTCCCAA ACAGCTCTGC
  Y
  TAGGACAGAC CCAGCTTATT TTCTTGCTTC TAAACAGTGT ATGCACTGAG AAGTCTGCAG
  AATGCTAGGC TTGGAGAGGT AAGTAGAAAA GAGGACCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147776923	ENSMUSSNP1231069	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49966091					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143820979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566349	regulatory region 566349			1706 bp proximal
Rr566350	regulatory region 566350			1913 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant