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rs49966091 SNP Detail
Summary
  • ID
    rs49966091
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:143820979 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GCGCATCAGC TCACTCCAGG ACTTGCCCTG TGAGTACCTA
    CAGACAGCTA GAGGCTAAAT GGAGGTGAGA GTATTACTAT AGATTCCCAA ACAGCTCTGC
    Y
    TAGGACAGAC CCAGCTTATT TTCTTGCTTC TAAACAGTGT ATGCACTGAG AAGTCTGCAG
    AATGCTAGGC TTGGAGAGGT AAGTAGAAAA GAGGACCAC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss147776923 ENSMUSSNP1231069 ENSEMBL ENSEMBL_Sanger f SNP C T
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs49966091 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143820979 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr566349 regulatory region 566349 1706 bp proximal
Rr566350 regulatory region 566350 1913 bp proximal
Rrbp1 ribosome binding protein 1 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory