rs49965681 SNP Detail

Summary

• ID
  rs49965681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130052266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACACCCCT TGCCGGTGTC TCTGGCAGTG GCAAAGTCCT
  TGGTCTTCAG ATGAGGTCTT TGTTTTGTTT GGAATTAACT TTTGTGCAGG GTGGAAATAC
  R
  TGTCTAGTTT CAGCCTTTTA TGTATTTTCC ATTTCTCAGA GCCATTTGTT AATGAGTCCC
  CCGCTCCCCG CCCTAGTGTA TTTTTTTGAC TCTCTAATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135893309	ENSMUSSNP2955014	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49965681					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130052266 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585149	regulatory region 585149	1256 bp proximal
Rr585150	regulatory region 585150	1675 bp proximal