rs49964704 SNP Detail

Summary

• ID
  rs49964704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93964723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGGGAA TCTGAACACC
  AGCGCAGGCT GCTCTCTACT TTCTTACATA CATTATAGTT ATGGGTGAGG CTATTTTTTT
  TTTAAAGTCA GAATGATGTT GAGTTTATAG ATCGAATAAG AAGAGCCACC ATGCTTGTGG
  TATGGAGCCA CCGTGAGCAG CACTCTGATC TGTGGGCAGG CATGTCTGTA CCCTGCTTCT
  Y
  CTGCAGCCAC CTCACATACT TCTAACTCAT CAGTTCTCAC CTTGGGTCTC GAACCCCCAC
  AGGGGTATTT ACATTACGGC TTATAACAGG AGCAAAATTA CAGTTATGAA GTAGCAGCAA
  AACAACTTTT CAGTTGGGGG GGGGTCACCA CAACCTGAGG AACTATATTA AAGGGTTGCT
  TGAAGCAGTA GGAAGGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60768982	NES16411082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49964704					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60768982	NES16411082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93964723 () rs orientation: forward

Symbol	Name	Function Class
Pdcd1	programmed cell death 1	1304 bp downstream
Rr366973	regulatory region 366973	1822 bp downstream
Rr416095	regulatory region 416095	537 bp distal
Rr416096	regulatory region 416096	1918 bp distal
Tssr13055	transcription start site region 13055	1510 bp upstream