rs49964245 SNP Detail

Summary

• ID
  rs49964245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132405538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCACT CTTGAATTCT
  ATATGCCTAC ACAAGTTACA CCATAGGATG ACAGTAAATG TTGCTGCTGC TGAAGAGGTA
  GTCTGGCCCC TTTAGACCAT TGCTGTGCTC TGTGCACATC TTAGAAAATA CTTTGCTAGG
  CAATTGTTTT CTAGAAGTCA ATCATGGAAG CTCTGTGTTT TCAGGTACTG TCCTTTTACG
  Y
  GAATGTTCTT TACATGGGTG TTGTGTTTTA TATCCCAGAT CTGTACGTGG GTGAGATCTT
  ATTCTCAAGG AACCTTTCCA GTTTTCTCCA TGCAAAGTGT AAGGAAAGTG CATGGGATCT
  CATTAATGGG ACTTTAACAA TTACAGCTGC TCTGTCCATA CTCACCTTGT CTGTGGCTTT
  AACCTGGTTC ACCTTCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135913821	ENSMUSSNP4657162	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49964245					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132405538 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585446	regulatory region 585446			1682 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant