rs49963834 SNP Detail

Summary

• ID
  rs49963834
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154279020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGTGAGA TGAGCTACAA GGTACAGCCT TGGAATAGGA
  TCATTTGTTA ATAACTATCA CGCATGATGA ACAATGTCAT AATTATATAT AAAAATAACC
  C
  ACTGTCACAA GTGCAGAACC TAGAGGCACA AATACCAAAG GGGCCAGACT CATGGGCTGG
  AGATTCACAG AATGAGGCTG GAGTATCTTC TTGTTTGTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136117045	ENSMUSSNP6072253	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49963834					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154279020 () rs orientation: forward

Symbol	Name	Function Class
Rr587867	regulatory region 587867	1868 bp distal
Rr587868	regulatory region 587868	542 bp distal
Rr587869	regulatory region 587869	855 bp distal
Rr587870	regulatory region 587870	687 bp distal