rs49956697 SNP Detail

Summary

• ID
  rs49956697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120872009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG AGCAGTGGGA GACCATCAAA
  Y
  CACACTCAAA GCAAGCATCA TCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147377005	ENSMUSSNP1204289	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320481402	CHEV_2_120867264	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49956697					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120872009 () rs orientation: forward

Symbol	Name	Function Class
Rr563766	regulatory region 563766	1923 bp distal
Rr563767	regulatory region 563767	146 bp distal
Rr563768	regulatory region 563768	235 bp distal