rs49956339 SNP Detail

Summary

• ID
  rs49956339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84124216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGTCAC AGCTCTGGGT
  AGTGTGGCAC ATATGACACA GCATTGTACT GGATGGTGTC TTCCAGGCTG GGCAGAGAAG
  GCCATCAGGA GCCGGATCCT GAGCATCTGA AGCCAAGTGG CATAGGGCGG GAATGTTACT
  GGAGGCCCGG GGACAGTATG GTGGGCAGAG ACAGTGTTGG GATGAGAGTG GTGTCCTCAC
  R
  CTAAGGAAGT GGTCCCTGGG TGTCCTCTAA CCTCTGTCTC TGCTTCTCTC CCTCCTGCCT
  CCACGTGGCT GGCTCCACAG CTATGCACGC CTGCCTTCTT CCTGCAGGGC TTCCTTCGGA
  CGAGCACGGT ACTATACTAA CGCTTAACCT GCTTGGGCTC CCTTGCCTTC ATCCTGCTTG
  AGAAGTGGGC TCCCACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905072	NES15952144	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49956339					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905072	NES15952144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84124216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dysf	dysferlin			Intron
				Noncoding-Transcript-Variant
Rr368107	regulatory region 368107			442 bp upstream
Rr633000	regulatory region 633000			353 bp distal
Rr633001	regulatory region 633001			409 bp proximal
Rr633002	regulatory region 633002			1332 bp proximal
Rr633003	regulatory region 633003			1399 bp proximal