rs49954199 SNP Detail

Summary

• ID
  rs49954199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141234032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CAAACAAAAC TCAGCCACGG
  R
  CTCCAGGTTC TTTTCTCCAG GGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147739694	ENSMUSSNP3294418	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321387739	CHEV_4_141062636	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49954199					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141234032 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1924 bp distal
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			389 bp proximal
Rr603783	regulatory region 603783			662 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant