rs49952704 SNP Detail

Summary

• ID
  rs49952704
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135795687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTTCAC AACAATCTCT
  AACTCCAGTT CCTGGAGGAT TCCTTGTCCT CTTTTGGCCT CCTCAGGCAT TAGGCTATTA
  ATAAACAATC CCTTATTAAT TTGTCTACTA TTTTCTATTA ATCTTTTAAA AATTTCTTTT
  TACACTTATT CATGTGCGGT ATACATGTGT TTCTGGACAC ATGCATGCTG TGCATGTGTG
  T
  AGAGGTCAGA GGACAGTTTT TGGAAGTGGG TTTTCTCTTT CCACCGTGTA GGTCCAGGGG
  ATGGACCTCA ATGCCAGGCT TGGTGGAAGG AAGCCTTACA TGCTGAGCTG TGTGTCCAGA
  CCCTCCAGTG GTTTTCCTAT TAACTATCTA CTATAACTTT TCTAGTGAAC TCCAGGTCAT
  TTCTTGCTTT CCTCCAGTGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147557331	ENSMUSSNP376068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49952704					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135795687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	1614 bp proximal
Rr602257	regulatory region 602257	1452 bp proximal
Rr602258	regulatory region 602258	1736 bp proximal