rs49952379 SNP Detail

Summary

• ID
  rs49952379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17062300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGGGAT ATTCTTCTGA
  GAAGTTTTGG GAAACACCTA TACTACTCGC TTCCCTGACC TTGCTTCTAC TCCCTCTCTC
  TATAGAATGT CATTGTTCCT ACAGGTCTAC CTCTCTCTGT GTAAACAGCA TCTATACACA
  ACTTAAGAGC AAACAAAACT CCCTAGGCCT GTCTACATTG CTCAGTGTCC ATGACAGCCC
  R
  GAGGTCCAGG AAGGGCTCAG TCACTTCACT GATCATAGAT TGTAATTAGA TTACCCACGG
  CCTATTTTTA AGTGCAAAAA ATTACATATT ATTATTGTAA TACATATTGG TCTACATAAA
  GACCTTTTTA GTATGTTTGT GTAAAATCTA GTATATTTGC TTATTTTTCT AAGAATAAAG
  ACACTCAAAA CAAAACACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60866959	NES15986468	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49952379					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866959	NES15986468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17062300 () rs orientation: forward

Symbol	Name	Function Class
Gm15473	predicted gene 15473	within coordinates
Rr626752	regulatory region 626752	1719 bp distal
Rr626753	regulatory region 626753	within coordinates
Rr626754	regulatory region 626754	176 bp proximal