rs49950596 SNP Detail

Summary

• ID
  rs49950596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117224733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC CAGATGCCTG TACTCCACTG
  Y
  TGCTGCTGCT CTTGGTGGTC ATCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135690022	ENSMUSSNP6902796	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320899415	CHEV_3_117134002	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49950596					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117224733 () rs orientation: forward

Symbol	Name	Function Class
D3Mit299	DNA segment, Chr 3, Massachusetts Institute of Technology 299	957 bp proximal
D3Mit299.1	DNA segment, Chr 3, Massachusetts Institute of Technology 299.1	834 bp proximal
Gm66094	predicted gene, 66094	within coordinates