rs49949342 SNP Detail

Summary

• ID
  rs49949342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130552145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGCAGT AAGACTTTAC
  ATATGAATTG TCTGCCCACA AAAGGGTCCA CTGTCAGATT AAATTAATGA GCTGCATGTT
  TTAATCATTA AGGTAATAGC AATATGTGGA TTCTTTGCCT CTGTTTTAAT CATTTCTGTG
  TTTTTACCAG CTAGCTCATC AAATGCTTTC TTTTGAGATG CCGTTGTCCC ATTTCACTGC
  R
  GAGAATAGCT TCTATGTGGG GCAGAGAGAA CGCTTTAGAG TTTTGAGAAA CCCTAAATAG
  CCTCAGGGCT TAGTGAAATG TATAGCTACG TCTTTGTCCC AGAGTGCTTT ATTTATTAGA
  CGGAATTCGG AGAGACAGGT CTGTGGCCAC CATTAGCAAA TGGGACCAGT ATGGGGTCGG
  ATTCTCAGAC TTGAAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61080254	NES16598313	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49949342					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080254	NES16598313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130552145 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	1794 bp upstream
Gm43524	predicted gene 43524	738 bp downstream
Gm65129	predicted gene, 65129	93 bp downstream
Rr585206	regulatory region 585206	within coordinates