rs49949180 SNP Detail

Summary

• ID
  rs49949180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21861911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATTGA AGTTCTGTCT
  GTCTAACTAA CTAATTAACA AACTAACTAA CTAGGGCAGG CTGTCACTGT GTAGCTCTGG
  CAAACCATGG AATTGTGTGT AGACTAAGCA TTCAGGGACT TCCAAAAATC CTTAAGCCTC
  AGCTTCCTAA GTGCTGGGAT TACAACCTGA GCCATCACAC TTCATTCCAT CCTTTCATGG
  Y
  CTAGTCATAG AAGTCAGAAA TAACAGCACT TATACCATAT CAATTGATCA GAGATGTAAC
  AAGTCTTTCT GCCCAGAGCT AAGCTCAAGA CATGTAGACT TCATTTTACC AGTAAAGAGA
  GGGGCATACC TCATGTGTTT ACTCATGACT ACATGAGGGG CTAGGCATGG TGATGTGTGC
  CTGAAATCAT AGCACTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134684612	ENSMUSSNP2068918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49949180					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21861911 () rs orientation: forward

Symbol	Name	Function Class
Gm65770	predicted gene, 65770	within coordinates
Rr574150	regulatory region 574150	679 bp distal
Rr574151	regulatory region 574151	1974 bp proximal