rs49948711 SNP Detail

Summary

• ID
  rs49948711
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108384673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTTTCAT GCCTTCTCTT TTTCTCCTTT CTATTTTGAA
  ACAGGGTCTC ATGTAGCCTA TGGTGGCTCA GACTCACTAT GTCACCAAGG CTGGCCTTGA
  S
  TTCCTGATCC TCCTGCTTTG ACCTCCCAAC GGTGCCACCA CACCTGGCTC AGAACTTATC
  GTGTATGTCT GGCAAGAATA TAATATCAAC TTGGTGTGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133501737	ENSMUSSNP4158690	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49948711					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108384673 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636092	regulatory region 636092	174 bp proximal
Rr636093	regulatory region 636093	365 bp proximal
Rr636094	regulatory region 636094	398 bp proximal
Rr636095	regulatory region 636095	626 bp proximal