rs49948534 SNP Detail

Summary

• ID
  rs49948534
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165947735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGGACA AAGTCCAGGC
  TGCTATAGCT ATTACGTGTG AGAGGCCACA GGCCTGAAGT CTTCAGGTTT TTGGCAGACA
  AACCGTCTGG GCTGAGGAGG CAGGGGTGGA AGTATGTTAA ATAAACCTCC CGAGTCCCAC
  TCAGGCTAGG CCGAGAGCTT TTGAGAACTG CCGGTGGCTC TGTTTCACTT AAGGCTGCCT
  S
  TCTCACGGTT ACGGTAGGGC TCTCTTTGTG TTTGAATGGT GAACTGCCAA AGCACAAGAT
  AAATCAACTC GCTACATTTG GTTACATTCC GGATGCTGAC ATGTGAGAGG TAAGTGAGGC
  AGAGGAAGAT GGCGGTGATG CAGAGGGTCA GAGGCTGCCG AAAAGCAGCC TCCCTAGTTA
  AGAGAGATCT CTGCTGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148249569	ENSMUSSNP7022102	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49948534					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165947735 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	within coordinates
Rr570136	regulatory region 570136	829 bp proximal
Sulf2	sulfatase 2	Intron