rs49948527 SNP Detail

Summary

• ID
  rs49948527
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124020033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCTTCT GTCCACTGTG
  GGCACTGCAC ACATGCAGTG CACAGACATA CACGCAGGCA ATGCTCGTAT TACACATAGA
  ATAAAATAAA CCTAAAATAG AAGAAAATTA CAAAGAATAT AGCTTTAGTT TTCCCATAAC
  TTTACCACAA AATAATAAGT TTAAATCACA TCTTCATGAA CAAATACTTT CTTCTCAAAC
  M
  AAAAGTCAGC ATCTATCATG ATGAATTTTG AATCATACTT GTGTTGGAGA TAAGAATATT
  AGCTCTGATA CAAATATTGA TTACTCGAGG TCAACTTTAA GAAATTACTA ACAATTCTTG
  CTAACATACA AGAACGTGGA CTTGCAGGAT TTAGAGGCAC ACCTAGCCTA TCATCATTTA
  TTTTTGTGCT TGAAACAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135782610	ENSMUSSNP5542271	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss320926412	CHEV_3_123929302	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49948527					SNP	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124020033 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	184 bp distal