rs49947505 SNP Detail

Summary

• ID
  rs49947505
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107512496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCCTGATG CTTTCTATCC CTGTCACAGT GCTGTTGTAA
  AGGATCCAGG GAAGCTGCTA GATGCTTCTA GGACTGTTAC TGCAAGGAAC CAGACTTCTG
  M
  TCCGATGCTG TGATTTTTTT TTTTTTTTTT TGATAGCTAA TGGTCAAGAA AACAACAGCA
  CCTTTTTCTT ATAAGGTGAT TTTTTTTTTT TTTTTTTTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133484774	ENSMUSSNP118209	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49947505					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107512496 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636003	regulatory region 636003	136 bp distal