rs49946751 SNP Detail

Summary

• ID
  rs49946751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169506193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGAGA GGAAGGCTCC
  TGGCTTTGTC CAGGCCTAAT GGTGATGGCT TCCCGGTGCC TATGACGTGC TCAGGAGCCA
  AGAAGCAAAC AAGCCGCTCA GTCTAATTTA TCATCCTTCA GGAAAGCAGG CTGAAACTTT
  TTCTTCTGGC TAGACTAAAT AGAGTCCAAA CTTATCTTCT GTTTCATTTT GAAAGGGGGG
  R
  AAAAAAAGCA AGACAGACAG CAGTCCAGCA CTCTTTTAAG ACGGGTGACA TTTCACAGCG
  GTTTTAGTTA CCTACGGCCT CTTCCACTAT CCTGTTTCAT AAACAGAGCA TCATTGTCTG
  ATAGCAGGGG TGTGGTTTGG AGCAGCCTGT CCCTGCTGGA CGTCCTGAGG CTCTTGGATG
  ACATTTTCCT GCTTTGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148289153	ENSMUSSNP28574	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49946751					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169506193 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	1337 bp downstream
Rr571229	regulatory region 571229	within coordinates
Rr571230	regulatory region 571230	1946 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	649 bp upstream