rs49946507 SNP Detail

Summary

• ID
  rs49946507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73071833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGGTCT CCCTTGGATT
  TTTTTTTTCT TGAGCCTTAG ATTCCTGATC TGTAAAATGG AATTACACGT AGCCACCTCC
  CAGGGTCCTG TGGAAATCTA ATGAGCTAAT TCCTGGCACA GATGCCCAAC ATCAACAAGA
  GAACCCACCG AAAGAGGTCC CGGTGGCAGT GGTACCCAGG AACTTAGTCA TTGATGAATC
  Y
  ATTTGTCTCG GGACAAATCC TGTATTCTTG CTGGGGAGAT AAACCAATAG TTGATACTTA
  CATAATCTAA CGACCCACAT GGCAGCAGAC TCCAGGAAGA GAAGCAGGTA CATTCTGAGT
  GGCCGCCTAA GGAAGGAAGA AAAGGGATGC TCCTCTTTGG AGGGGTAAAA GGCATGTGTG
  ACTAACTCAC CACACGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61020313	NES16107370	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49946507					SNP	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020313	NES16107370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73071833 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	165 bp upstream
Rr380947	regulatory region 380947	1240 bp upstream
Rr648940	regulatory region 648940	282 bp distal
Rr648941	regulatory region 648941	within coordinates
Rr648942	regulatory region 648942	213 bp proximal
Rr648943	regulatory region 648943	566 bp proximal
Rr648944	regulatory region 648944	1923 bp proximal
Tssr72937	transcription start site region 72937	454 bp downstream