rs49945281 SNP Detail

Summary

• ID
  rs49945281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152497431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAG GGGTGGGGGC TGGAAAGAGT
  R
  GAGGGAGGGG AAATTGCCAT CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147970981	ENSMUSSNP5936598	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320562937	CHEV_2_152481247	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49945281					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152497431 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1181 bp upstream
Rr374088	regulatory region 374088	1536 bp downstream
Rr567410	regulatory region 567410	1940 bp distal
Rr567411	regulatory region 567411	1170 bp distal
Rr567412	regulatory region 567412	669 bp distal
Rr567413	regulatory region 567413	343 bp proximal
Rr567414	regulatory region 567414	1947 bp proximal
Tssr26849	transcription start site region 26849	1252 bp upstream
Tssr26850	transcription start site region 26850	1245 bp upstream
Tssr26851	transcription start site region 26851	1207 bp upstream
Tssr26852	transcription start site region 26852	1178 bp upstream