rs49944044 SNP Detail

Summary

• ID
  rs49944044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137006814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC AGCCATGTCC ACCACGCCCC
  R
  GTCCCAGCTA GGGAGGCAGC CCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147601364	ENSMUSSNP505493	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321362844	CHEV_4_136835418	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49944044					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137006814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15125	CpG island 15125	656 bp distal
Rr602577	regulatory region 602577	493 bp distal
Rr602578	regulatory region 602578	within coordinates
Tssr39739	transcription start site region 39739	1985 bp downstream
Tssr39740	transcription start site region 39740	1914 bp downstream
Tssr44110	transcription start site region 44110	301 bp upstream
Wnt4	wingless-type MMTV integration site family, member 4	Intron