rs49942262 SNP Detail

Summary

• ID
  rs49942262
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTAAAA GATTTATTAT
  TCCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CCTCTTCTTT CTGTCTGTCA CCCTGTTCCT CCCAATGAGG GTGCTGGGAA CAGAACTCTG
  GTCTTTTGCA AGAACAGCAA GTACTCTTGA ACCACGGAGC CATCTCTCCA GCCCCAGAAA
  C
  ATTTTCAAAA GACTGTACCA AGATACTTGA CTACAAGAAG GTATACCAGG CCACTGGGCG
  GAAAGAGAAC ATTTCCATCT TGTCAATCAT CCCTAACTGA ATCTCCATAG GACGTGCTAG
  GAACCTGGTA GAGCAATTCT GACCCTGATT CAGAAGGCCA CATGGAAGAG GATCTCCAGA
  ACGGCTCTGA AAAGGCGAAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148344072	ENSMUSSNP4415319	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49942262					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333169 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	1580 bp proximal
Rr572142	regulatory region 572142	1683 bp proximal