rs49941984 SNP Detail

Summary

• ID
  rs49941984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58662002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCAATGA AGCCCAAGGC
  CATTTCTCTC CATATACAAA GCACATCGGT GTATCTGGGG GTCTACCTGG CAAGCTCTCC
  AGGAGAGGTA ACCCCCACAG AAGCAGGCAG TGGATGCAGG GAAGCAGGCA TGAGGAACAA
  TACTTAAGGA AATAGACAAT CTGTGTAAGA AAGAAGCTCT GGTAAGCACA TGGCTAGAAT
  Y
  TAGCCTCTCA TGACAGATAG GGGCTATTAA GACAGCTGCA GTGTGATACT TCTCAACCGT
  TGTACAGAAG ACAACCGAGG AACACCATCT GTGCTCTGCA GGCATGTCAG TTTCCACACT
  GCTGTGAGGG ATTTGCACTG CAGAACTAAC CACCCTTTCC TATTTCTGCA GCATAATTTA
  ATAGTATCAG TTTCTTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146393880	ENSMUSSNP2702405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49941984					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58662002 () rs orientation: forward

Symbol	Name	Function Class
Rr592921	regulatory region 592921	1163 bp distal
Rr592922	regulatory region 592922	within coordinates
Rr592923	regulatory region 592923	1667 bp proximal