rs49941317 SNP Detail

Summary

• ID
  rs49941317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135836617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTTTCA AACAAAACAA
  AACACAACAC AACACAACAA AGAATGCTAA GCTGAGGGAG AGCAAGTGAT CTTGCCAAGA
  GCGACTAAGA AGGAATGAGC TCAGCTACAG GCTACATGGG AAGATGCCTT CAGGATCCTG
  GCTTTTTTCT TGTGGAAGAC CAGGAGTGGG GGGTAGGGTG GTGGGGGATG TACTTCACAG
  Y
  GCCCTGAAGG CACACCAGGA TGACAGGTGC ATACTGTGGC CAGGTGAGAC AGCCTAAGGG
  GAAGCAGGGG CCTGAAACCG CCTGCTGGCT TTTCAGATGG CTGCCTCCAG CATTTCCTCT
  TTGCCTACCT GGAGCTTGGC TTACTGGGGT GAGGGCAAGC TCCCAGTTAA CTACTTGAAC
  TGACAGGGGT TCATCTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363383264	MGP_WTSI_4_135665221	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	T	C	C	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs49941317					SNP	C	C	C	T	T	C	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	T	T	T	C	C	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363383264	MGP_WTSI_4_135665221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135836617 () rs orientation: forward

Symbol	Name	Function Class
Rr602271	regulatory region 602271	1772 bp distal
Rr602272	regulatory region 602272	1972 bp distal
Rr602273	regulatory region 602273	613 bp proximal