rs49940345 SNP Detail

Summary

• ID
  rs49940345
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147517455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATATATTAAA TAGGTGACGT ATAAAAGAAA ACTGGGTGGG
  TGTATATTGT CTGATATAGT CTTCTCCTTG GCATGAGTGC CAGGTCTGCC TCAATATGGC
  C
  CTTTACATAC AGACGTGCAA GTGCTGTGCC AGCCTCTTTG CCATCCAGCC TGTGGCACAG
  ACTGATTTCT GCCTCCCAGA ACACACATGG CAAGCCTATG G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147960221	ENSMUSSNP4641535	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49940345					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147517455 () rs orientation: forward

Symbol	Name	Function Class
Rr398817	regulatory region 398817	1708 bp downstream
Rr398818	regulatory region 398818	903 bp upstream
Rr398819	regulatory region 398819	1302 bp upstream
Rr604487	regulatory region 604487	443 bp distal