rs49938516 SNP Detail

Summary

• ID
  rs49938516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41332660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATCTTTA CTGTTGGAGG
  CTGGGTGTGA ATCAGAGGGT TGATGAAGCC CTGGGAAGGT TGCATGAGCA CTGGCAGACC
  CTCAGCCAAC ACAGGAGTGC TCAGTGAGCC TGACCTCCAC GGGCCCTGTG CTGTGTGACG
  GCAGGTATGA AACTCTGTTC AGTTTCTACC GTATCCTCAT CCCTGGGCTC CCTGTCAGGG
  R
  CACAGAGGAA GTCTATGTTG GTTTCTGTGG GAGTCATGGC TCGCAGCCCA GCATCTTAAT
  TGTCTTTAGT TTGAAAATAA CTGCCTCACT GGACAATGGC ATGTCTCTAC TCTGTTTTAG
  AAGAAAATTT TGCTTTGTGT AAGCTAATGT TTAACTTTAA TAATCTTTTC ATTAGTCCTA
  AAGACTGTGC TAATTATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398364	NES15902907	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49938516					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398364	NES15902907	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41332660 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1214 bp upstream
Rr575940	regulatory region 575940	1247 bp distal
Rr575941	regulatory region 575941	1328 bp distal
Rr575942	regulatory region 575942	730 bp distal
Rr575943	regulatory region 575943	within coordinates