rs49934250 SNP Detail

Summary

• ID
  rs49934250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140457958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTGATTG GCCACTCTTT
  AATACAAAAT AGTATATTTA AAAGTCCATT GAGCAGTTTT GGGGTCTATA TATGCTCAGT
  GAATGCATGC AGGATTTAAG AGCTATGGAG TAGATGTAAC TTATTAAGTC ATCTCTAAGC
  AAGTTTGAGC TCTATTGTTC TTTCCTTTCC TGTGGTTACC TGTAAATATT TCAGTTATAA
  Y
  GGACACTTCC TCAACAATAT ACCTTGGTAA GACAGTAAAG TCAAAGGTGA AATAGTGTCA
  GTGCAACTTT GCACAACACA GTTTTTTCCA TGCATATGTA GACTATCCTA GATACGTTGA
  GATGTGAAGT ATGGTGTGAC TATAGATATT CTTTAGACAA AGCACTCTTG ATACTCAAGC
  TTATTGATTG CTTGTTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60810273	NES16487205	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49934250					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60810273	NES16487205	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140457958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			1331 bp proximal
Rr419879	regulatory region 419879			1495 bp proximal