rs49933658 SNP Detail

Summary

• ID
  rs49933658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15398057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGATTTT TATATATAAT
  TTCAGACCAA TTAAGAGAAA ATTTGCTTCA CAGATAACAA TGGCTTTTTA GAAATGGACT
  TAAACGAAAA TTTACATATC TGTTACACCA AACCAACTGT GAGCTGCCAT TTTTCTGGGT
  GTGAAATTTA TTATATTATT CCCATAAAAA GGGCATTTAA AAGATGTTAG GTTGCTTTGC
  K
  AAAGTTTCTA CTGCCAAAAA AGGGCTTTAA AAAATCCAGA AATATAAATT ATTTTAGCAA
  TAATTCCATA ATTTTTACCT CTATCATTAT GGTATATTTT CTGTCAGTGA GCATCTGTCT
  AGGATGACTG ATTCTATGTC CTAGGAATAA CTGAATTTAT AAAACTACCT GCTTAGTAGT
  TATTCTCTTT CTCTAAAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60866322	NES15981646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49933658					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866322	NES15981646	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15398057 () rs orientation: forward

Symbol	Name	Function Class
Foxp2	forkhead box P2	Intron
Rr626663	regulatory region 626663	199 bp distal