rs49933282 SNP Detail

Summary

• ID
  rs49933282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139300568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCGAGGGA AGGCAACAAG ACCAAACCTG AAACACAGCA
  GTAACCTCAC AACACAGCAC CACCCCAGAG CACCACACTC TTTCTCGTCT GTCACAAAGA
  R
  CACCAAGGCT TTGTCCTGTG AGACAGGGTA CCTGCCTGCA AGCTTACGCA CAAGCAGACA
  AGACGGACAC ATAAGCTAGT AACAAGACAA TGGCGGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147674660	ENSMUSSNP6345117	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49933282					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139300568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15171	CpG island 15171	429 bp proximal
Iffo2	intermediate filament family orphan 2	Intron
Rr603244	regulatory region 603244	973 bp proximal
Rr603245	regulatory region 603245	1274 bp proximal
Rr603246	regulatory region 603246	1367 bp proximal
Tssr39955	transcription start site region 39955	1387 bp upstream
Tssr39956	transcription start site region 39956	1440 bp upstream