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rs49927831 SNP Detail
Summary
  • ID
    rs49927831
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:141687298 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTCCC ACATTCTGAT ACTGTCTAGT
    R
    AGTACATCTC TGCGAGTTGA CGTGA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss61089563 NES16605959 PERLEGEN MM_PANEL2 f SNP G G G G G G A G A A G
ss136009105 ENSMUSSNP6954822 ENSEMBL ENSEMBL_Sanger f SNP G G
ss320997329 CHEV_3_141644501 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs49927831 SNP G G G G G G G A A G A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61089563 NES16605959 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:141687298 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bmpr1b bone morphogenetic protein receptor, type 1B Intron
Rr586376 regulatory region 586376 152 bp proximal
Rr586377 regulatory region 586377 584 bp proximal
Rr586378 regulatory region 586378 717 bp proximal
Tssr35923 transcription start site region 35923 669 bp downstream
Tssr35924 transcription start site region 35924 687 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory