rs49926461 SNP Detail

Summary

• ID
  rs49926461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152047087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGATGGG CGGATCTCTG
  TGAGTCTGAG GCTAACTCTG ATAGCCGAGG CTACACACAA AAATCCTATC TCCAAAAGCA
  AACAAAACAA AAAAAAAAAA AAAAGAAAAA ATCAAACATT AAGGATCTGG CTCAGTTAAA
  AGCGCTCATC TCTCTTGTAC AAGATTCCCA CTATCCACAG CAGGCAGCTC ACAACAGTCC
  R
  GAACTCTGGT TCCATGAGGA TGGAATGTTC TCTGATGGCT TTGAAGGCTA CCTGCACACT
  TACAAACATG TAAAATACAT CGTCTCTCAT CAAAGCAGCC ATCACGCCTG TTTAAACACC
  TGCATCAGTT GCTGGCCCCA GCTGACAGTG TCCTGGAGTC GCCTCCCCAG CAAAGGCCAA
  CCAAAGAGGA CCTTGGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136102521	ENSMUSSNP2573846	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321028684	CHEV_3_152004414	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49926461					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152047087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13947	CpG island 13947	795 bp distal
Miga1	mitoguardin 1	1043 bp upstream
Rr587531	regulatory region 587531	1088 bp distal
Rr587532	regulatory region 587532	553 bp distal
Rr587533	regulatory region 587533	1507 bp proximal
Tssr36215	transcription start site region 36215	1034 bp upstream