rs49920278 SNP Detail

Summary

• ID
  rs49920278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150144386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA GAATGCCCAG CATTTCCAGC
  Y
  CCCGCCCAGG GCAGCAAACA CATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148046477	ENSMUSSNP6152432	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T		C
ss321427876	CHEV_4_149434038	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49920278					SNP	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150144386 () rs orientation: forward

Symbol	Name	Function Class
Gm13067	predicted gene 13067	within coordinates
Rr398877	regulatory region 398877	within coordinates
Rr605160	regulatory region 605160	1857 bp distal
Rr605161	regulatory region 605161	within coordinates
Rr605162	regulatory region 605162	1468 bp proximal
Rr605163	regulatory region 605163	1955 bp proximal