rs49919206 SNP Detail

Summary

• ID
  rs49919206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116532213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAATCTCA GAAAACCAGA AGGAAAGAGA AAACTGCCTA
  CACGCGAGTC AGTGACGTGG TGGAAAAGAT GGTGATGCCT GTGCCTCTTG TTTGAAGTGG
  Y
  TTGGTTTGTA AAGCGATTGA TAAATTGTTT ATGGTATCAG CACGTCCTGA CACAAAAGGC
  CAGGTGTAGC AGTTGTTGTC TGTAAAGCCA GCACTGAGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60436373	NES15938073	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49919206					SNP	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436373	NES15938073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116532213 () rs orientation: forward

Symbol	Name	Function Class
Agl	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	1435 bp downstream
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583772	regulatory region 583772	1160 bp distal
Rr583773	regulatory region 583773	806 bp distal
Rr583774	regulatory region 583774	1058 bp distal