rs49916691 SNP Detail

Summary

• ID
  rs49916691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121218021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTTGCTT TCAAGTGGAG GTCAGGAGAT GACTTGATGG
  AATTGGCTCT CTTCTTCCTC CATGTGGGCT CTGGAAACTC AAGTCGTCAG GCTATGCATC
  Y
  GGCACCTTTA CCACAGATAT TTCTTGGCCC ACTTAACCCA ATTCTAAAAG TCTTTACACC
  CCTCCCCTCT CTTTCCTTCT TTAGGACCAG CACTGGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135720478	ENSMUSSNP3245218	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49916691					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121218021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13758	CpG island 13758	1584 bp proximal
Gm42928	predicted gene 42928	within coordinates
Rr375667	regulatory region 375667	1365 bp downstream
Rr397975	regulatory region 397975	1945 bp upstream
Rr584073	regulatory region 584073	1635 bp proximal