rs49916158 SNP Detail

Summary

• ID
  rs49916158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150019729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GCAACAGCTA GTATGTATGA
  Y
  CCTTCCAGAC AGAGCAATCA ACTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148043540	ENSMUSSNP7013517	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C		T
ss321427318	CHEV_4_149309381	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49916158					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150019729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377412	regulatory region 377412			1108 bp upstream
Rr605111	regulatory region 605111			1082 bp distal
Rr605112	regulatory region 605112			1593 bp proximal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant