rs49911356 SNP Detail

Summary

• ID
  rs49911356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102709839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCTCTTTAG CACTGGGGAT TGAACCCCTA GGGCCTGGTC
  TGTGCCAGGC AGGTGCCCAA CCACTGAGCC ATGTCCTTAA TACCCCTAGG CCTTATTTTT
  Y
  CTTTACTTTT TTTTTTTTTT AAATCTTTGA GACAAGAAAT CGCAAAGTTG CCCAAACTGA
  TCTTAAACTC AGTCTGTAGC AAAGAAGGGG CCCTGGATTA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147136028	ENSMUSSNP3111041	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49911356					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102709839 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596317	regulatory region 596317			1844 bp distal
Rr596318	regulatory region 596318			551 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant