rs49910644 SNP Detail

Summary

• ID
  rs49910644
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27165751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCAGAGT AAGGGCTCTC
  TATCTAACAA CCTGACAAGA TCACGTTATC TTCCAAGGGG CCTTGAATTC ATCCAAGAGC
  TACGATAGAA TCTCAAATAA CTGGCAATTC ATTTACTTCC AGTCATCTCA TTGTAATCTG
  TCTAGTATAA AGGTACTTTA AGAGTTGCTG TGAGAAACCT GGACAGGCAA CGTGTCGGGA
  M
  AGGTACTGCT TTCAGTAAGA AAGAAAACAA AATGCTCTTT CTTTTACTAC AGTCAAGCTC
  CCCTAATCTA ACAATGTGAA ATCATAATCC AATGCTCCAT GAAGCAGTGT GCACTTAATA
  CTGAATCTTG GAGCAACTTG TCTCATAACT TCAGACGAGA GATATATCTG ACCAGGAAAG
  TCTACAGATA CCCCACATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380575	NES15885330	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	C		A	A	C	A
ss134702122	ENSMUSSNP7248268	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49910644					SNP	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380575	NES15885330	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27165751 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574346	regulatory region 574346	419 bp distal
Rr574347	regulatory region 574347	509 bp distal