rs49909671 SNP Detail

Summary

• ID
  rs49909671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108713936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAGATACA CTCTGGTGGC CATGACAAAC AGCTGAGACT
  CTCCAGTGTC CTGTGTCGCT AAGCTGGGAT GTTCAGTAGG TCAGGTATGT TACTGCATGT
  Y
  CAACTGTATG TTTGTGATAG AAATAGGTCC CTTGGGACGA ACCCCACTGT CGGTTGAAGG
  GCAGCTGTAT AAGCTCCCAT GCAATACAGA TCAACGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133508255	ENSMUSSNP6149031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49909671					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108713936 () rs orientation: forward

Symbol	Name	Function Class
Rr636189	regulatory region 636189	387 bp distal
Rr636190	regulatory region 636190	626 bp distal
Rr636191	regulatory region 636191	1344 bp proximal