rs49909167 SNP Detail

Summary

• ID
  rs49909167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83994806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACCAGCT AGAGCTGACC
  AATGAGGAGT GTGGAGTTCA ATGACCTCTT AGTGAACTGT TTAGAAGACA TTTATAGACA
  GCCCCATGCC ATGTGCAGAA CCCTGTTTCA GGTACTACGA AGGTTACAGT AGCTAAGCAA
  AGCTCCCCTA GTTTCTTAGA GACTGCCCAA TATTCTAATG GAAATGTGGG AAAGAGATAC
  R
  GTGTAGACAT TACCTAGCTA TTGCTGCTGA AAAGCAACAT GCAAGGGAGT CTTGGGGTCC
  GGGAAGGTGC CATGTGGCTC AATTGATAGA ACACTTTCCT AGTTTGAGCT CCAGATTGCA
  TAAAGTGGGC ACTTTGGTGT ATGCCTATAA TCCCAGCACT GAGGAAGGGG TGGTAAGAAG
  ATCCAAAGTC CAAGGTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905569	NES15954329	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49909167					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905569	NES15954329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83994806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	1121 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	102 bp distal
Rr632976	regulatory region 632976	215 bp distal
Rr632977	regulatory region 632977	1097 bp proximal
Rr632978	regulatory region 632978	1209 bp proximal
Tssr1912	transcription start site region 1912	1570 bp upstream
Tssr57398	transcription start site region 57398	1522 bp upstream
Tssr57399	transcription start site region 57399	1540 bp upstream