rs49908968 SNP Detail

Summary

• ID
  rs49908968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33103505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACACAATG TTTTCTTAAA
  AGCTTGAAGC AAGGTAATTA TTATCACACA TGTATGAGTT AAAAGGGGCA GCGTTTTCTA
  GTCTGAAAAG ATATATATGG TTTACTAAGT CAACCAGGAC AAGGCAGGCT AAGTCCAGTT
  GGTATCAAGG CTTTCCAAAT ACAGGGCTGT GTTCCATCCA GAGCACGAAA CACAAGGATC
  Y
  CCCAGGGGAC GTTCAGCCGG CAGGAATCTG AGCAGCCAGC AGCAGGAGAA GTCAGTACAG
  CAGAATGAAT CACAGCCTGG GGCCAAAACT TAACTCAGTC CTAGCTCAGC TGCTTTGACA
  GCTCTTCAGC AGAGGATAGC AGGCATCGCG CTACCACTCT AGGACCAGGA TTTCAGCACA
  GCAGCGGTGG ACAGTTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60875849	NES15977684	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	T		T
ss321780603	CHEV_6_33076570	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49908968					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60875849	NES15977684	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33103505 () rs orientation: forward

Symbol	Name	Function Class
Rr628172	regulatory region 628172	within coordinates
Rr628173	regulatory region 628173	820 bp proximal