rs49908858 SNP Detail

Summary

• ID
  rs49908858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131371991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTTTGCT TCTGTCATTG CTCTTTGCTC CTCTTCACAG
  GGAAGTGTCA CATGCTGCTG TCTGCGCTGG TACTGTCTCA GTTCCACCGT GCTCACACCA
  K
  CAGTTAGTGG TGGAGATTTT TCCAACTGCA AAGATACACA AGGGTCAAAT GGGTTCTCCT
  TCTCACAAGG CAGGCCTGGA GAGGCAGAAG TTCTCTGGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147607002	ENSMUSSNP5221730	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49908858					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131371991 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	Coding-NonSynonymous
Rr565285	regulatory region 565285	within coordinates
Rr565286	regulatory region 565286	134 bp proximal
Rr565287	regulatory region 565287	574 bp proximal