rs49905622 SNP Detail

Summary

• ID
  rs49905622
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAACACT CACTCACATG
  CCTATATGTA CATGCATGCA CACACATGCA CACTCACATG CACACGTGCA CACACGAGCA
  TCCACAGGCA CATGCACACA TGCTTGTGTG CACATACCAG GCATGGTGAA GAATACTATA
  ATCCCAACAC TGGGTAGATG GAGACAGCCA GCCTAGCCTT GCGGGTGAAT CCTGGGTTCC
  G
  GTGAGAGACC TTGCAGCAAA ACTCAAGGTA GATCTAGGAG GATACAAGCT GGCATTCAAC
  TGAGCCAGCA ACTGGCCCCC TCCACAGTTC TTGCTATGTC TTCATAGCAA ATTCCTCTGT
  TAGAGGTAAT GCTGTGTGGA ATGGTGTCTT AGCTAGGGTT TCGTTGCTAT GAAGAGACAC
  CATGACCAAG GCAACTCTTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147553138	ENSMUSSNP1893534	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs49905622					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621880 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	825 bp upstream
Rr602181	regulatory region 602181	1420 bp distal
Rr602182	regulatory region 602182	1104 bp distal
Rr602183	regulatory region 602183	422 bp proximal
Rr602184	regulatory region 602184	836 bp proximal
Rr602185	regulatory region 602185	1402 bp proximal
Tssr39650	transcription start site region 39650	611 bp upstream
Tssr39651	transcription start site region 39651	815 bp upstream
Tssr39652	transcription start site region 39652	845 bp upstream