rs49904455 SNP Detail

Summary

• ID
  rs49904455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29121424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGTTCC AGCTCCCTGG
  CCTGCTGCAG GCAGAGGGGG GAAAGAGTGG GGAGGGAATT TCTCCTTTGC CCAAACATCC
  CATGACATAC CAGGGACACG GACAGCTTTC CTGTGCCCAC ACCATTAAGA GCTGCTCTCC
  TCTTCACCTG CCATGTGCAA GGGGTAGGGC AAGCTCAGCA AAATGCCTCA GCAATCAATC
  Y
  AGACCAGGGA TATCTCCATG ACTTTTGGCG GTAGTGTGGG CCTGGGATAT CAACACAATT
  CCTAGCTGCC ACAGGGTCAT GGACCCAGAT ATGGGACCCA GCAGCAATAA CATGGGCCTG
  GATATCCCCA TGACCTCTCA GGGCAATACC GGTGAGTCCT CCAGTGGTTC ATTTATATGA
  AGAGTTGTTT TTGTTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381981	NES15888704	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49904455					SNP	T	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381981	NES15888704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29121424 () rs orientation: forward

Symbol	Name	Function Class
Rr574657	regulatory region 574657	1338 bp proximal