rs49901120 SNP Detail

Summary

• ID
  rs49901120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90565347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTCAT CACCAGAACC
  TCTCCCGAGA CATGGCCTGA TCATGAACAG TGTACAGAAC TCAGCAATGT ATTTCTTCTT
  AGGTGTGTGC ACATGCATAC AAACAATATC ACAAATATTT CTGGGAAGTA CTCAGGTCAT
  GGTTCTGGGT ATCCCTTAAT GTTCAGTAAA AGAAGTTTAG TTTTTATTAT CAGGAACATC
  R
  TTTTGGGCAG AAGACATGGC TCCTGCCTTC AGTGATACCT TGCTTGAATA CCGGGGGGAA
  TACCGGCCTT GAATCCAAAG TGCCAGCCGG TGGCTCATGC CTTTAATCCC AGCACTCGGG
  AGGCAGAGGC AGGCGGATTT CTGAGTTCAA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG
  GACAGCCAGA GCTATACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424110	NES15930499	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49901120					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424110	NES15930499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90565347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57853	predicted gene, 57853			mRNA-UTR
				Noncoding-Transcript-Variant
S100a7a	S100 calcium binding protein A7A			mRNA-UTR
Tssr946	transcription start site region 946			1910 bp upstream
Tssr30264	transcription start site region 30264			1611 bp upstream
Tssr34247	transcription start site region 34247			1383 bp downstream
Tssr34248	transcription start site region 34248			1401 bp downstream