rs49899054 SNP Detail

Summary

• ID
  rs49899054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112367095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCATGCTT GCCTAAACTC CTTTGGCATT TGAAAGAAGC
  AGCCAGAGGG AGTGATTTCA ACAACAAGCA GAGAGGAGCA GAATATTAAA CAGGGCTGAA
  R
  TATTAGGAGT TACAGAAATA TCCAGGCTGC AAAACTGCTA GTAGCCAGTA TCTCTCGGGG
  AATAGGAAGT ACCCATCAGC AAGAGTGACA GTCCTTGGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60929789	NES16197534	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs49899054					SNP	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60929789	NES16197534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112367095 () rs orientation: forward

Symbol	Name	Function Class
Gm38873	predicted gene, 38873	262 bp upstream
Rr636339	regulatory region 636339	1830 bp distal
Rr636340	regulatory region 636340	512 bp distal