rs49897288 SNP Detail

Summary

• ID
  rs49897288
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38335252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCGTTAGGA TTTCTCTGCA CTTGACTAGT GACATAACCA
  GCTGTTCTTT TGCCACCAAA CTGCCAATTT GGCTCACTTG TTGTAGGGTT TGTGGTCTTT
  C
  CTTAAGGCAA CATGACAGAG AGGCAACCAT TTAGAAGAGG CACGTGTGAT CTTCCAAAAT
  ACAACTGTTA GTTCCTAGTC TGAAGATTAT ATGTTCTCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134829325	ENSMUSSNP7060519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320717656	CHEV_3_38180025	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49897288					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38335252 () rs orientation: forward

Symbol	Name	Function Class
Rr575652	regulatory region 575652	425 bp distal
Rr575653	regulatory region 575653	548 bp proximal
Rr575654	regulatory region 575654	1683 bp proximal