rs49897154 SNP Detail

Summary

• ID
  rs49897154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41570249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTAGTAG CTAATTCAGG
  GGAGGGGAAA GGATGACCCA GGTTTTAGAT TGACTATTTT TTGAGCTATG GAGCTCCTTT
  GAGACTGCTG TCCAGATCAG CTCGTTGCTA CTGGTATTCG AAGATTCTCA GGAGTCCAAG
  TTGTACTTTT GCTTGTAGCC TAATTTAAAA ATGAGATGTT TTGCATCTGA GCAAAAACCT
  Y
  TTGCTGGATA CAGGAAAAGG CTGGACTCTG ATCTAGTTAT CTTTTGATTA CAGCAACAGC
  TCTGGGTGAG AATAGAATTT ATAGAGGAAT AATCTGTGAA GCCATAGAAA GAAACCCTAA
  ATTAATCTAG TGAGTATATG GCCTCTCACC ATTTTAGGAG GCACCAGATT CATTTGCACT
  ATTAGGAATG CTAGTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397322	NES15898485	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	T	C		T	C	C	T
ss135042475	ENSMUSSNP1515623	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49897154					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397322	NES15898485	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41570249 () rs orientation: forward

Symbol	Name	Function Class
Jade1	jade family PHD finger 1	mRNA-UTR
Rr575994	regulatory region 575994	1449 bp proximal