rs49895750 SNP Detail

Summary

• ID
  rs49895750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCAACA TAGCAAAAGT
  TGGAAGACAT TCAGTCAGGA CAATTAACAG GAAGTCTCCC CTGCTGAGCC TTCAGACATG
  CTGAGAGCTC TCAGGAGGCG GGAGCTGCCC AGCCTGGGCT GGTGGGTGTG ACTCCAGAAG
  AATAGAAGCC ATATGGGAAC CCATGAGACC CCCTGAGTGG ACACAAGATG ACATCTAGGT
  Y
  ACAGATCCCC AGATAGGACT TTTCTTCTGG GAAGATGAGA GAAGTTGGGG CGGGGCAGAC
  CTAATTTAAT AGCCCATTTG AAGGCACAAC CCTCAGTCCC CAAGGAAGGC GAACTACAAG
  TCTGCCATTG TAATGGACAG CTATTCTGAT TTTGTTTCTA GGCAGAGTAT TTCTGTGATG
  TCCAGGCTGG CCTTGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147992053	ENSMUSSNP7057766	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49895750					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173897 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1409 bp upstream
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1420 bp distal
Rr604584	regulatory region 604584	919 bp distal
Tssr44579	transcription start site region 44579	1413 bp upstream
Tssr44580	transcription start site region 44580	1384 bp upstream
Tssr44581	transcription start site region 44581	1371 bp upstream
Tssr44582	transcription start site region 44582	250 bp upstream
Tssr44583	transcription start site region 44583	222 bp upstream