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rs49894962 SNP Detail
Summary
  • ID
    rs49894962
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr4:148656326 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACAGACACA GGTCTTTGTG
    GGAATGGCTG TGCTCGATGT AATAAAACTT GTCAAGATTC AGCTTAAGTG GTTTCTTTTA
    GGGGTCTTGC TTTAATTCTT TCCTTTTTTT TAAGATTTAT TTATTTATTA TATATAAGTA
    CACTGTAGCT GTCTTCAGAC ACACCAGAAG AGGTTGTGAG CCACCATGTG GTTGCTGGGA
    W
    TTGAACTCAG GACTTCTGGA AGAGCAGTCA GTGCTCTTAA CCACTGAGCC ATCTCTCCAG
    CCCCTCCCCC CCCCCCCTTT TCCTTCTTTT TGAGATAGGG TTTTACCATA CAGGGTTTCC
    CTAGGCTAGC CTTGAGTTCA GCTGTGTAAT AACCCTGTAG CCCAGGCAGG CCCTGAACTT
    TCAGTCCAGT CCCACCTCTT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
LG/J
SM/J
ss148011765 ENSMUSSNP4999741 ENSEMBL ENSEMBL_Sanger f SNP A
ss321421260 CHEV_4_147945978 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
A/J
LG/J
SM/J
rs49894962 SNP A T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:148656326 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Exosc10 exosome component 10 Intron
Noncoding-Transcript-Variant
Gm13204 predicted gene 13204 1993 bp upstream
Rr604704 regulatory region 604704 676 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory