rs49894962 SNP Detail

Summary

• ID
  rs49894962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148656326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGACACA GGTCTTTGTG
  GGAATGGCTG TGCTCGATGT AATAAAACTT GTCAAGATTC AGCTTAAGTG GTTTCTTTTA
  GGGGTCTTGC TTTAATTCTT TCCTTTTTTT TAAGATTTAT TTATTTATTA TATATAAGTA
  CACTGTAGCT GTCTTCAGAC ACACCAGAAG AGGTTGTGAG CCACCATGTG GTTGCTGGGA
  W
  TTGAACTCAG GACTTCTGGA AGAGCAGTCA GTGCTCTTAA CCACTGAGCC ATCTCTCCAG
  CCCCTCCCCC CCCCCCCTTT TCCTTCTTTT TGAGATAGGG TTTTACCATA CAGGGTTTCC
  CTAGGCTAGC CTTGAGTTCA GCTGTGTAAT AACCCTGTAG CCCAGGCAGG CCCTGAACTT
  TCAGTCCAGT CCCACCTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148011765	ENSMUSSNP4999741	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321421260	CHEV_4_147945978	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49894962					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148656326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Gm13204	predicted gene 13204			1993 bp upstream
Rr604704	regulatory region 604704			676 bp distal