rs49893075 SNP Detail

Summary

• ID
  rs49893075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141748719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAATAA ATAAATGCTT
  CCTTAACCTT CTCTGAGGAA AGAGATAAGG GAAGCACACG AATTTAAACA CATTGTTCTA
  GGACTAAATG TTCACAGATA ACCATACTGA GGGAACACAT AAAAATATTT AGATAGTTGT
  ATTTTTTTTT TTTTGACCAC GTGGAATACA ATAACCTGCC AGTCCTGAGC ACAAGTTACA
  R
  AGTGATTTCT GGTTTGAGTA TCTCCCAGAA CTGTAGTCCA GGGGGGTCTT CTCTGAAAGT
  GGCATGCGTC ACTGTTTAAA AATCGGGTGG CATCTGGCAA GTTCTGTGGC TCTGCTTGTA
  CTCCTGGGAT TCTCTGGAAC TTTCTCTCGT AGTGTTTGAC ATCCCCTCTC TCCCCAGCCT
  CTGACACAGG GCTTCCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61089233	NES16604392	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49893075					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089233	NES16604392	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141748719 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
D3Mit160	DNA segment, Chr 3, Massachusetts Institute of Technology 160	1344 bp distal
D3Mit160.2	DNA segment, Chr 3, Massachusetts Institute of Technology 160.2	1212 bp distal
Rr586379	regulatory region 586379	610 bp proximal